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Seminars

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  • Title:VAReporter: Varaint Reporter for Clinical applications of massive parallel sequencing
  • Start Date/Time:2018-03-14 / 12:00
  • End Date/Time :2018-03-14 / 13:30
    • Speaker:Chi-Ching Lee(CGU)
    • Place:Lecture Room A of NCTS, 4F, General Building III, NTHU
    • Host:Prof. Lee-Wei Yang (NTHU)
    • Abstract:Abstract:
      VAReporter is a free web-server package designed to support all kinds of disease-targeted sequencing tests for the two dominant sequencing platforms (Ion PGM and Illumina), ranging from single gene tests to whole-exome sequencing tests. VAReporter can provide comprehensive annotation by integrating a wide variety of biomedical databases. Comparison of gene mutation spectrum between study cohorts and TCGA/ICGC tumors is also supported by VAReporter. Moreover, state-of-arts algorithms that take mutation phenotype into account are used to rank the importance of mutated genes. In brief, VAReporter is designed to meet the requirements from individual diagnosis test as well as large-scale research cohort.
    • Detailed contents: 
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